qdiv

Introduction

  • What is qdiv?
    • Key Features
  • Installation instructions
  • Data types

Example usage

  • Load and save data
    • Load and create a MicrobiomeData object
    • Save files
    • Load other types of files
  • Data management
    • Finding consensus ASVs
    • Subsetting
    • Rarefy
  • Diversity
    • Alpha diversity
    • Beta diversity
  • Plot
    • Heatmap
    • Alpha diversity profiles
    • Beta diversity
  • Null models
  • Other statistics
    • Mantel test
    • PERMANOVA
    • Bootstrap summaries of dissimilarity matrices
  • References

Core Functions

  • qdiv
    • qdiv package
      • Overview
      • Core subpackages
        • qdiv.diversity
        • qdiv.stats
        • qdiv.plot
        • qdiv.model
        • qdiv.sequences
      • Main data container
        • MicrobiomeData
qdiv
  • Search

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