qdiv
Introduction
What is qdiv?
Key Features
Installation instructions
Data types
Example usage
Load and save data
Load and create a MicrobiomeData object
Save files
Load other types of files
Data management
Finding consensus ASVs
Subsetting
Rarefy
Diversity
Alpha diversity
Beta diversity
Plot
Heatmap
Alpha diversity profiles
Beta diversity
Null models
Other statistics
Mantel test
PERMANOVA
Bootstrap summaries of dissimilarity matrices
References
Core Functions
qdiv
qdiv package
Overview
Core subpackages
qdiv.diversity
qdiv.stats
qdiv.plot
qdiv.model
qdiv.sequences
Main data container
MicrobiomeData
qdiv
qdiv.data_object module
View page source
qdiv.data_object module